In this article, we will be going through the installation steps of SQLplus in the Linux Operating System. ""*.sraHisat2featureCounts Commercial use of Docker Desktop in larger enterprises (more than 250 employees OR more than $10 million USD in annual revenue) requires a paid subscription. Subread aligner can be used to align both gDNA-seq and RNA-seq reads. Please don't fill out this field. Installing SQLplus on Linux. Genome Biol 10:R25. Subread.sourceforge.net created by unlisted. Policy. exactSNP: a SNP caller that discovers SNPs by testing signals against local background noises. adb install [path_to_apk_file] E.g. THIS PROJECT HAS BEEN MOVED TO http://sourceforge.net/projects/subread We tried to reduce our dependency as much as possible so no fancy libraries are needed. I would say that any version of featureCounts released in the recent years work nearly equally well in analyses, and the results should be all the same, no matter which version is used. A tag already exists with the provided branch name. (This may not be possible with some types of ads). Before you run the installation command, make sure to update apt and then run any necessary upgrades. Extract the file by using the command below with Tar or you can use alternatives such as p7zip. For any inquiries, please contact Prof Wei Shi. Because we want to minimise the dependency to other packages, we do not use autoconf to generate the Makefiles. You do not need Cygwin or the Linux subsystem in Windows for building Subread. Doc Linux:mancommand.Presentation created withPython Landslide The data has been generated by Vincent Pags. You might want to add LxRunOffline.exe to your PATH. AUR : subread.git: AUR Package Repositories | click here to return to the package base details page # apt-get install r-base. To install Subread package for other operating systems such as FreeBSD and Solaris, you will have to install them for the source. You do not have permission to delete messages in this group, Either email addresses are anonymous for this group or you need the view member email addresses permission to view the original message, Download Subread source package to your working directory from SourceForge. 5. . https://lxrunoffline.apphb.com/download/ {distro}/ {version} will redirect to download page for desired distro. If you downloaded the flat files, just repeat the installation procedure. A C language compiler. - test: Directory including test data and scripts. Are there any other good options for downloading it to your personal server space or would I need to get the sys admin to install it as a module? Install Wine using the following command . I have a private GitHub repository in which I included an environment.yml file.. What works: When I am trying to create an environment locally from a different laptop (compared to the one on which I have created the repository) like that To install the latest version on Ansible in CentOS , you should install EPEL (Extra Packages for Enterprise Linux) first using the below command: sudo yum install epel-release. Click OK. Domos low-code data app platform goes beyond traditional business intelligence and analytics to enable anyone to create data apps to power any action in their business, right where work gets done. Complete command is apt-get and it's the easiest way to install files/Softwares packages. It can also be used to discover genomic mutations including short indels and structural variants. featureCounts: Summarizing reads to genomic features. Example #3 - Change the Ownership. - Subjunc: a read aligner developed for aligning RNA-seq reads and for the detection of exon-exon junctions. The use of machine learning enables us to discover new splicing errors and quickly design therapeutic compounds to correct them. For setting up LinuxBrew on Ubuntu 20.04 or 18.04, we need to install GIT on our system, here is the command for that. Integrate data from anywhere and create app-led workflows to tackle any business challenge. 1. Subread aligner can be used to align both gDNA-seq and RNA-seq reads. Download the latest version of Subread package from http://subread.sourceforge.net/. You need to navigate to the following directory of Python. Nucleic Acids Research, 41(10):e108. 2022 Slashdot Media. Intel CC should work well but we have not tried it on our source code. Assume the suffix of fastq files is fq.gz and its corresponding fastq files are: sample_id_1.fq.gz sample_id_2.fq.gz. For ongoing development since then, see http://github.com/samtools/samtools. In the Linux environment, we can use the install command to change the ownership of the file. The executable programs will be moved to the "/bin" directory. I usually install subread via Conda, however the newest version (2.0.3) doesn't appear to be available there. yum install screen. The Locate command is not pre-installed on some distributions of Linux. Click URL instructions: PhD projects are available for further development of the Subread package, including the development of new methods for analyzing single-cell sequencing data. THIS PROJECT HAS BEEN MOVED TO http://sourceforge.net/projects/subread Here is some additional information: To find out where somefile is located use: locate somefile. Subread aligner can be used to align both gDNA-seq and RNA-seq reads. Steps to install SSL certificates on Linux Web Server by Buy/Renew/Download. Option 1: Install with one command Option 2: Step-by-step installation instructions Install specific version Troubleshooting Update Uninstall Remove data Next Steps The Azure CLI is a cross-platform command-line tool that can be installed locally on Linux computers. Please provide the ad click URL, if possible: Domo transforms business by putting data to work for everyone. # yum install R. Those using Ubuntu can use the apt-get command as below. Unpack the contents for your TAR file: tar xJf sfdx-linux-x64.tar.xz -C ~/sfdx --strip-components 1. ll /owner/. 2. Press J to jump to the feed. 2. Rsubread: a Bioconductor R implementation of the Subread package. Enter src directory of the package and issue the following command to install it on a Linux operating system: make -f Makefile.Linux To install it on a Mac OS X operating system, issue the following command: Because the current permission does not allow the file to run. This article proposes an elegantly simple multi-seed strategy, called seed-and-vote, for mapping reads to a reference genome. The Subread package incorporates many small testcases that cover most of its functions. ; When there are multiple versions of somefile located in the PATH you can find out which one is executed first use which somefile. 2. Step 1: Installing R Package in Linux. Follow the below steps to install SQLPlus on Linux Operating System: Step 1: Download the Basic Package (ZIP) by using the following command: Subjunc: Detecting exon-exon junctions and mapping RNA-seq reads. Or, you can install Linux over Windows, removing the Windows operating system and replacing it with Linux. This easy tools informs you about packages that are currently being installed and also it informs you about the packages that are available in repositories. Are you sure you want to create this branch? Still, it can be installed by installing the "locate" package: Gene fusion events can be detected as well. If you're using an Arch and Arch-based Linux system, installing Yarn on the system is a piece of cake. Explanation. 2) sample annotation file: column #1: sample_id column #2: subject_id column #3--#n (optional) For clinical RNA-seq, samples from the same subject should be assigned to the same . Type the following command to uncompress it: A new subdirectory called bin will be created under the home directory of the package, and the executables generated from the build will be saved to that subdirectory. Some basic modules quickly inspect sequence quality, nucleotide composition bias, PCR bias and GC bias, while RNA-seq specific modules evaluate sequencing saturation, mapped reads distribution, coverage . The Subread software package is a tool kit for processing next-gen sequencing data. The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote, Y Liao, GK Smyth, W Shi, Nucleic acids research, 2013 PMID:23558742, featureCounts: an efficient general purpose program for assigning sequence reads to genomic features, Y Liao, GK Smyth, W Shi, Bioinformatics, 2014 PMID:24227677, The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads, Y Liao, GK Smyth, W Shi, Nucleic acids research, 2019 PMID:30783653. You can install .NET manually in the following ways: Manual install Scripted install You may need to install .NET dependencies if you install .NET manually. . The executables can be found in the bin diretory of the binary packages. The Subread package comprises a suite of programs for processing next-gen sequencing data, in particular RNA-seq data. -C unpacks the contents in the ~/sfdx directory, while --strip-components 1 removes the root path component. In short it's a simple command based tool that you use to install files/softwares. Now, run the Pacman command with root access to install Yarn on . salmon. All timings and comparisons reported in this article were undertaken on a CentOS 6 Linux server with 24 Intel Xeon 2.60 GHz CPU cores and 512GB . Subjunc aligner was specified designed for the detection of exon-exon junction. You can follow the instructions on the Rsubread webpage to install it in R. An experienced user may also try building the binary programs from source code. It's the successor of the highly successful, but R specific, R Markdown ecosystem . Use of this site constitutes acceptance of our User Agreement and Privacy Subjunc aligner was specified designed for the detection of exon-exon junction. Docker Desktop on Linux runs a Virtual Machine (VM) so creates and uses a custom docker context desktop-linux on startup. featureCounts: an efficient general purpose program for assigning sequence reads to genomic features. bwa bowtie2 salmon subread hisat2. . Right-click on the ad, choose "Copy Link", then paste here Press question mark to learn the rest of the keyboard shortcuts To run the version installed with your package manager, you will need to execute the binary from a terminal. Command. Please check with them and they will be able to update their recipes. Run terminal and then first, issue an update command-. install -D -o educba file1 /owner/. sudo pacman -Syu. linux-64 v2.0.1 osx-64 v2.0.1 conda install To install this package run one of the following: conda install -c bioconda subread conda install -c "bioconda/label/cf201901" subread Description Edit Installers Save Changes The main samtools source code repository moved to GitHub in March 2012. Install Git on Ubuntu 20.04. SAMtools provide efficient utilities on manipulating alignments in the SAM format. sudo apt install screen. I noticed OP has expanded scope via comments under other answers. Either you can go with a complete GNOME desktop which includes all the GNOME utilities, or you can go with the stripped-down version having the least amount of GNOME packages. It can be gcc or clang or anything. Let's move to the second method to find the Linux files with Extensions. THIS PROJECT HAS BEEN MOVED TO http://sourceforge.net/projects/subread If you have issues installing Gradle on Arch Linux via Snap, you can download the compiled ZST package from here. Alpine CentOS Debian Fedora openSUSE SLES Snap Ubuntu Thanks for helping keep SourceForge clean. 1. 3. Installation from a binary package The easist way to installing Subread on Linux, Windows and macOS is to directly download the binary packages on our Release page. This assumes that you have a Shell program and a Python2 interpreter in PATH. It includes Subread aligner, Subjunc exon-exon junction detector and featureCounts read summarization program. sudo systemctl enable --now snapd.socket sudo ln -s /var/lib/snapd/snap /snap. Usage. Publications that cite Subread/Subjunc aligners. Enter src directory of the package and issue the following command to install it on a Linux operating system: make -f Makefile.Linux To install it on a Mac OS X operating system, issue the following command: make -f Makefile.MacOS Load one version into your environment and run it: $ module load subread/1.6.2 $ subread-buildindex $ featureCounts. - Subread: a general-purpose read aligner which can align both genomic DNA-seq and RNA-seq reads. Would you recommend the R package for this as well rather than the command line option? Traffic: 230 users visited in the last hour, User Agreement and Privacy Installing Ansible on CentOS, Red Hat, Fedora, SUSE etc. As per the above install command, we are performing the ownership change operation with the help of the "-o" option. It includes Subread aligner, Subjunc exon-exon junction detector and featureCounts read summarization program. Download the Subread source package from SourceForge website to your local directory. No matter if Subread is installed from the source code or a binary package, you can run "test_all.sh" in the "/test" directory. The latest releases can be downloaded from the release page. Conda is a general purpose installer for Linux Mac and windows featuring a bioinformatics oriented repository (Bioconda). To install Subread package on FreeBSD or Solaris, you will have to install from source. But, somehow, you might find yourself installing the packages in Linux from any other source. A CSR and a Private key file is required on the server. Entrez gene identifiers and chromosomal coordinates are provided for each exon. See versions of subread which are available: $ module avail subread. It includes Subread aligner, Subjunc exon-exon junction detector and featureCounts read summarization program. subread. If you are using CentOS 7, you can install it using the following: sudo yum install screen. Installation in the R environment We also provide an R version of our package, Rsubread, on Bioconductor. Method 2: Using locate Command. Alternatives 1 Required By Search Packages Links 4 Download 2 Install Howto Update the package index: # sudo apt-get update Install subread-data deb package: # sudo apt-get install subread-data Files 3 Changelog 10 a. prepare a sample annotation file and sample ID file 1) sample ID file, an unique ID per line. Using a specific python interpreter If you prefer, you can also run MultiQC with a specific python interpreter. hisat2 HISAT2HISAT2PythonGTFhisat2-bu. You can install it via Chocolatey: choco install lxrunoffline, or download and unzip. Create the directory where you want to install Salesforce CLI. This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository. We have published papers on our Subread/Subjunc read aligners and featureCounts read quantifiers. Conda will download needed programs from repositories and fix dependancies. Rsubread is based on the successful Subread suite with the added ease-of-use of the R programming environment, creating a matrix of read counts directly as an R object ready for downstream analysis. The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote Read alignment is an ongoing challenge for the analysis of data from sequencing technologies. Installing Linux on top of Windows. Or if the user can't run sudo commands, we need to run it as a root user. Policy. operating system: The source code package of Subread (v2.0.0) on, You may use these commands to build the binary programs from the source code (assuming that you saved the downloaded file as ", https://sourceforge.net/projects/subread/files/subread-2.0.0/subread-2.0.0-source.tar.gz/download. 4 . Bioinformatics, 30(7):923-30. 1 $ conda install subread 2 Fetching package metadata 3 Solving package specifications: . Quarto is Posit's new open-source scientific and technical publishing system built on Pandoc that allows you to weave together narrative text and code to produce high-quality outputs including reports, presentations, websites, and more. srafastq [Linux|]project4_01:srafastq fastqBulk To install an application, you first need to download that .apk file on your PC. samtools. Some of the reasons can be the packages are not available in the repository, the package has been developed in-house, or you want a Linux package with customized dependencies that might not be available in the standard repository. THIS PROJECT HAS BEEN MOVED TO http://sourceforge.net/projects/subread Step 3: Launch the "P3X OneNote". Installation -------------- You may use Subread package by directly downloading a binary release suitable for your operating system (no compilation is needed), or you may build it from the source. THIS PROJECT HAS BEEN MOVED TO http://sourceforge.net/projects/subread "The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote", Nucleic Acids Research, 2013, 41(10):e108. Update the repositories. Make sure that box is checked. The Subread software package is a tool kit for processing next-gen sequencing data. To perform this task, run the change file permission " chmod " command on the terminal: $ sudo chmod a+x P3X-OneNote-2022.10.117.AppImage. Liao Y, Smyth GK and Shi W (2014). Subread: a general-purpose read aligner which can align both genomic DNA-seq and RNA-seq reads. Install GNOME Desktop Environment in Linux Mint. The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote. Please cite: Langmead B, et al. Select your location on the map and install Linux. You can use LxRunOffline - "A full-featured utility for Windows Subsystem for Linux (WSL)". sudo pacman --sync --refresh pacman -Syu. Simply decompress the package and the programs will be in the "/bin" directory. Go to the Firefox download page and click on the Download Now button. Installation from a binary distribution This is the easiest way to install the Subread package onto your computer. Here you have two options. Sidebar Enhancement This package gives you more options to handle files and folders. Site is running on IP address 204.68.111.100, host name 204.68.111.100 (Spring Valley United States) ping response time 11ms Good ping. Documentation Packages .NET is available in official package archives for various Linux distributions and packages.microsoft.com. Then you can easily install Ansible using this command: sudo yum install ansible pip install --force git+https://github.com/ewels/MultiQC.git If you cloned the git repo, just pull the latest changes and install: cd MultiQC git pull pip install . Gene fusion events can be detected as well. Install Yarn on Arch Linux. Installing Sublime Text on CentOS CentOS uses YUM, which simplifies the package installation process on the system. sudo apt-get install build-essential. The easist way to installing Subread on Linux, Windows and macOS is to directly download the binary packages on our Release page. Do note, if your server's kernel upgrades, you'll need to reboot the system. Install subread. 2. 3. For more information, see Alternate ways to install PowerShell on Linux. Bowtie, an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers. We can only recommend the Rsubread package but it may not have what you are looking for. ; If somefile was added today you need to first update the locate database by running sudo updatedb. Run the command below if you are using an RHEL based OS. sudo snap install gradle --classic. I usually install subread via Conda, however the newest version (2.0.3) doesn't appear to be available there. The platform that allows everyone to drive action from data. Are there any other good options for downloading it to your personal server space or would I need to get the sys admin to install it as a module? The following methods exist for installing kubectl on Linux: Install kubectl binary with curl on Linux Install using native package management Install using other package management Install kubectl binary with curl on Linux Download the latest release with the command: Installing Quarto. PLEASE UPDATE YOUR BOOKMARK! To do so, search for "Turn Windows features on or off" from the taskbar then select it. Step 3: Extract the installer file. Download a Subread binary distribution that suits your oprating system from SourceForge website. It creates environnements in which you can specifies versions of programs that will live in that environment. osx-64 v2.8.1 conda install To install this package run one of the following: conda install -c bioconda bioconductor-rsubread conda install -c "bioconda/label/cf201901" bioconductor-rsubread conda install -c "bioconda/label/gcc7" bioconductor-rsubread Click Continue in case you don't want to change any information provided. Download a Subread binary distribution that suits your oprating system from SourceForge website . Current Global rank is 421, site estimated value 5,439,108$ #filezilla #xampp. THIS PROJECT HAS BEEN MOVED TO http://sourceforge.net/projects/subread To install Sublime Text with YUM, first, add the GPG keys using the following command: sudo rpm -v --import https://download.sublimetext.com/sublimehq-rpm-pub.gpg Now, add the Sublime Text repository with: Installation To install this package, start R (version "4.2") and enter: if (!require ("BiocManager", quietly = TRUE)) install.packages ("BiocManager") BiocManager::install ("Rsubread") For older versions of R, please refer to the appropriate Bioconductor release . It can also be used to discover genomic mutations including short indels and structural variants. The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote. Download Subread source package to your working directory from SourceForge http://subread.sourceforge.net, and type the following command to uncompress it: tar zxvf subread-1.x.x.tar.gz Enter. Simply decompress the package and the programs will be in the "/bin" directory. We do not maintain Conda. 3. bwa bowtie salmon fastq subread ! There is another "locate" command available that can be used to search the files with extensions. mkdir ~/sfdx. Subread and Subjunc were published in the following paper: Yang Liao, Gordon K Smyth and Wei Shi. To this end, some programs and libraries are necessary. Open a command terminal. Subread: A superfast and accurate read aligner. SpliceCore QIAGEN CLC Genomics Workbench is a powerful solution that works for everyone, no matter the workflow. RSeQC package provides a number of useful modules that can comprehensively evaluate high throughput sequence data especially RNA-seq data. Install Package for Sublime Below is the list of packages we will be installing and see how to configure the properties of the packages. Subjunc aligner was specified designed for the detection of exon-exon junction. Step-by-Step Guide to Install Ubuntu 18.04 LTS on your Laptop or Desktop Step 1) Download Ubuntu 18.04 LTS ISO File Please make sure you have the latest version of Ubuntu 18.04 LTS, If not, please download the ISO file from the link here https://www.ubuntu.com/download/desktop To install Subread package for other operating systems such as FreeBSD and Solaris, you will have to install them for the source. A case study for analyzing RNA-seq data: Using Bioconductor packages Rsubread and Limma to perform a complete analysis for RNA-seq data. I will ask my sys admin to install the new version of subread as a module. Install WSL command You can now install everything you need to run Windows Subsystem for Linux (WSL) by entering this command in an administrator PowerShell or Windows Command Prompt and then restarting your machine. Start Installation. There are two ways to do this: You could install Linux in a "dual-boot" configuration, where it sits alongside your Windows operating system on your hard drive and lets you choose which operating system you want to run each time. Subread installation. If you are using Fedora or an RPM-based Linux distribution, you can install Steam using RPM Fusion. featureCounts: an efficient general purpose program for assigning sequence reads to genomic features. Change the downloaded file permission to launch in Linux. First, run the following Pacman commands on your terminal shell to update and refresh the repository. We do not maintain Conda. The usages of the programs in this package can be found in the users-guide in the "/doc" directory. First of all, we need to install the R package, which is available in the default repository of RHEL/CentOS and Ubuntu. . Finally, run the following Snap command to install Gradle on your Arch system. If you're running Ubuntu or Debian, you can install Steam from the Ubuntu Software app or use the Ubuntu repositories. The Subread software package is a tool kit for processing next-gen sequencing data. The operating systems currently being supported include multiple variants of Linux (Debian, Ubuntu, Fedora and Cent OS) and Mac OS X. You seem to have CSS turned off. Important. CSR can be created by using a hashing algorithm called SHA-2. The options related to paired-end read assignment were changed recently, hence you may need to refer to the users' manual of the version-in-use for the paired-end read related options. Once the process of download has been completed, the file shall be saved into the tar extension. featureCounts. Install on Linux. At the end of the installation, we can check the current version of Screen, using the following command line: screen -version adb install ProtonVPN_Android_App.apk If the installation was successful, you will see the message Success on the Terminal. Here we describe how to install it from the source. Thank you, yes that was why I wanted to update the package version, but it wasn't available in Conda. You can also try deploying PowerShell binaries directly using the Linux tar.gz. Installation Since Ubuntu Server 16.04 is sans GUI, the installation and usage of Docker will be handled entirely through the command line. Cutting-edge technology and unique features and algorithms widely used by scientific leaders in industry and academia make it easy to overcome challenges associated with data analysis. Altium Designer offers a unified design environment backed by over 35 years of innovation and development. Find "Windows Subsystem for Linux" from the features list. You can try to install PowerShell using the PowerShell Snap Package. The featureCounts program in both Subread and Rsubread packages is well maintained. To install any package press " CTRL + SHIFT + P " COMMAND PALLET " install package " " package Name ". SAM (Sequence Alignment/Map) is a flexible generic format for storing nucleotide sequence alignment. To do so in most distributions, open a terminal and type: /usr/bin/firefox. You signed in with another tab or window. sudo apt update. A small panel will ask for confirmation. Enter src directory of the package and issue the following command to install it on a Linux This is the easiest way to install the Subread package onto your computer. Installers Edit Info: This package contains files in non-standard labels . To install the latest version of Wine on Arch or Arch-based distributions, follow these instructions. Subjunc: a read aligner developed for aligning RNA-seq reads and for the detection of exon-exon junctions. If you use Windows, you may consider to install Mingw-w64 for that it provides all the required programs and libraries in one place. Paul@ninja-ide :~#7za l Python-3.9.tgz. Both 64-bit and 32-bit machines are supported. For the latest updates not available in the Ubuntu repositories, you can install Steam from its official DEB package. linux-64 v2.12. Select "Erase Disk and install Ubuntu " in case you want to replace the existing OS otherwise select "Something else" option and click INSTALL NOW. There are three other ways to install PowerShell on Linux, including Linux distributions that aren't officially supported. For the mapping of RNA-seq reads, Subread performs local alignments and Subjunc performs global alignments. conda create -n rna conda activate rna conda install -y -c bioconda fastqc trim-galore hisat2 subread conda install -y -c bioconda salmon # salmon-0.14.2 conda install -y -c bioconda samtools . Thank you - I am looking to use featureCounts. 1. We also provide an R version of our package, Rsubread, on Bioconductor. Open the Windows Features dialog. Many Git commands accept both tag and branch names, so creating this branch may cause unexpected behavior. 1. After installation, you may test the programs to see if it works. To enable easy access to these executables, you may copy them to a system directory such as /usr/bin or add the path to them to your search path (your search path is usually stored in environment variable PATH), Liao Y, Smyth GK and Shi W (2013). Installers Edit Info: This package contains files in non-standard labels . Ce(tte) uvre est mise disposition selon les termes de laLicence Creative Commons Attribution - . PowerShell wsl --install This command will enable the features necessary to run WSL and install the Ubuntu distribution of Linux. For the mapping of RNA-seq reads, Subread performs local alignments and Subjunc performs global alignments. Docker Desktop terms. 2019-04-30 - Alexandre Mestiashvili <mestia@debian.org> subread (1.6.4+dfsg-1) unstable; urgency=medium * Update d/watch, add uversionmangle to remove -source suffix * New upstream version 1.6.4+dfsg * Refresh patches, update typo.patch * Switch to debhelper-compat, drop d/compat * Install genRandomReads binary and generate man page Libraries including zlib (for gzip), libpthread (for multi-threading) and libm (for math). To uninstall any application, we first need to list all installed applications. Use the syntax below. All Rights Reserved. From schematic to PCB layout and interactive differential pair routing, to design documentation and a seamless ECAD/MCAD integration, Altium Designer empowers engineers with a single view GNU General Public License version 3.0 (GPLv3). Using RNA sequencing (RNA-seq) data and Artificial Intelligence are both a necessity and an opportunity to develop therapeutics that target splicing errors. THIS PROJECT HAS BEEN MOVED TO http://sourceforge.net/projects/subread Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Last updated on 2022/06/22. The operating systems currently being supported include multiple variants of Linux (Debian, Ubuntu, Fedora and Cent OS) and Mac OS X. 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